Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916984.1_cds_XP_016466648.1_59478
CDS Infomation

[gene=LOC107789364] [db_xref=GeneID:107789364] [protein=probable protein phosphatase 2C 55 isoform X2] [protein_id=XP_016466648.1] [location=complement(join(5544..5570,6487..6777,7343..7492,7825..8149,9738..10037,10183..10646))] [gbkey=CDS]
Sequence

ATGCCGAGTAATTATCTTTTCAGATTAAGCCGTGCAGCTAGGCAGGGACTCCAGAAATCT
ATTTCTGGGCAAGAAAGTGGGCTCCAGGACTCAGTAGAGATTTTGGTTGGCCAAGGGAGA
TTGTTGTTGGGCAATTCAAAGAGCTTCTATTCCATACCATTTGCAAGATCAACTGACCTA
AATGTGTTTGTGCGGCCTGGAACTTTAGCTGCCACACAGGCAAATTTGCATATAGTCAAC
CAGAAAAAGAATCTTTCTGTAGTTGGATCTATTTCTCGTGCAATTTCTATTCCGTCTGTA
TCAGGGCCTGCATTTCAGGTCTGTGGCTATCACATTGATCGCTTGATATCTGAGCCTACT
CAAGGTTTGTTGGACACTAAGTATCACAAAGCACCTATGGAGATCTGTGGTTCAAGAATT
TTTCCGCCTGGCTGTTCCTCAAGTAAAATGGCTTCAAGGCATCTCAATCCTGTTTTGGCT
GTAAATAGTCCAGTTACTTCTTATAGCAATAGAAGCTTTAATTGTAGAAAAGCCAGCATG
AGTTTGAGAAATAAAAATCAGCCCAACAACTTCTTACTTTACGGATACTTCGCATACAAT
GTGGCAAAGAGAAAGGGAAATTCTAATCTATATGAAGGTTTTGGATTGACGGGGTTCCAC
ACTTCATCACCTGCTTGTTCCCCTGCGGGCACTGCTCCTGATGTGTCCTTTGGTAACTCT
ACATGCGAGGTGCAGCTTTCAAGTTCAGCAGATTCTTCCGAACAGAATATCCACATTGAC
AGAACCCTGAAGCTAAACTCAGGATCATGTTACCTGCCCCATCCTGACAAAGAAGAAACA
GGTGGAGAGGATGCTCATTTTATTTGTGGTGATGAACAAGCAATTGGTGTAGCTGATGGT
GTTGGTGGTTGGGCTGATCTTGGTGTTGATGCTGGGCAGTATGCACGAGAGCTCATGTCT
AACTCAGTAACTGCGATTCAAGATGAACCAAAACGTTCAGTGGACCCAGCCAGGGTCCTC
GATAAAGCTTATACATGCACAAAAGCCAAAGGTTCCTCAACTGCCTGTATAATCGCCCTT
ACAGATCAGGGCCTGCATGCCATTAATTTAGGAGACAGTGGATTTATGGTGGTTAGAGAT
GGATGTACTGTTTTCAGATCCCCTGTGCAGCAGCATGATTTCAATTTCACATATCAACTA
GAGAGCGGTAACTCTGGTGACTTACCAAGCTCTGGAGAGGTGTTCAAAATACCGGTGGCA
CCAGGAGATGTTATAATAGCTGGTACTGATGGGTTGTTTGACAATTTGTACAACAATGAT
ATTACTGCAATTGTGGTTCATGCAACAAGAGCTGGCTTAGGGCCACAGGTGACAGCTCAA
AAGATAGCTGCTTTGGCTCGGCAAAGAGCACAGGATAAAAACAGGCAGACTCCTTTCTCT
GCTGCAGCCCAAGAAGCTGGGTTCCGTTACTATGGCGGGAAGCTGGACGATATAACTGTG
GTTGTCTCCTACATAAGCAGTGACAGAAATGAAAGATCCAATGGCTTACAGATGTAG

Peptide Sequence

PEP ID

XP_016466648.1
PEP Infomation

PREDICTED: probable protein phosphatase 2C 55 isoform X2 [Nicotiana tabacum]
Sequence

MPSNYLFRLSRAARQGLQKSISGQESGLQDSVEILVGQGRLLLGNSKSFYSIPFARSTDL
NVFVRPGTLAATQANLHIVNQKKNLSVVGSISRAISIPSVSGPAFQVCGYHIDRLISEPT
QGLLDTKYHKAPMEICGSRIFPPGCSSSKMASRHLNPVLAVNSPVTSYSNRSFNCRKASM
SLRNKNQPNNFLLYGYFAYNVAKRKGNSNLYEGFGLTGFHTSSPACSPAGTAPDVSFGNS
TCEVQLSSSADSSEQNIHIDRTLKLNSGSCYLPHPDKEETGGEDAHFICGDEQAIGVADG
VGGWADLGVDAGQYARELMSNSVTAIQDEPKRSVDPARVLDKAYTCTKAKGSSTACIIAL
TDQGLHAINLGDSGFMVVRDGCTVFRSPVQQHDFNFTYQLESGNSGDLPSSGEVFKIPVA
PGDVIIAGTDGLFDNLYNNDITAIVVHATRAGLGPQVTAQKIAALARQRAQDKNRQTPFS
AAAQEAGFRYYGGKLDDITVVVSYISSDRNERSNGLQM

Transcript Sequence

Gene sequence data has not been registered.